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PATHFINDER

Precision diagnostics for infectious diseases: Integrating mNGS and host factors to guide individualized treatment

Integrating rapid metagenomic sequencing with the body's own immune response biomarkers to diagnose central nervous system and respiratory infections faster and treat them smarter.
PATHFINDER

Project description

Timely and accurate diagnosis of central nervous system and respiratory infections remains challenging and may result in delayed or suboptimal treatment. The PATHFINDER project aims to develop an integrated diagnostic approach that combines rapid nanopore-based metagenomic sequencing (mNGS) for pathogen detection with host-response biomarkers that provide insight into the patient's immune response.

By integrating information on both the pathogen and the host response, the approach may enable more accurate diagnosis and support earlier, more precise treatment decisions. The project will develop and evaluate this approach in Norwegian hospitals, establish collaborative diagnostic networks, and assess its clinical and health-economic impact.  

The study uses a multiple work-package (WP) design

WP1 develops mNGS workflows  

WP2 evaluates host biomarkers 

WP3 builds diagnostic networks to promote standardization and access

WP4 assesses cost-justification in Norwegian hospital settings

 

Qr code

Fundings

Funded by Helse Sør-Øst and ReSpiraNet.

PATHFINDER is embedded in strong national and international networks.

  • NorPreM — Norwegian National Network for Personalized Medicine (norprem.no)
  • RespiraNet — National research network for respiratory infection diagnosis and treatment (respiranet.w.uib.no)
  • VARG — Vestre Viken Airway infections Research group (vestreviken.no)

  • ESCMID ESGMD —  ESCMID Study Group for Genomic and Molecular Diagnostics (escmid.org/esgmd)
  • Genomic Medicine Sweden (GMS) —  National precision medicine initiative, Microbiology section (genomicmedicine.se)

 

News

Find the latest updates related to the project and team members.

  • September 22, 2026: Fall Meeting at Drammen Hospital
  • August 01, 2026: PROSPERO registration submitted for CNS infection biomarker systematic review
  • August 14, 2026: PATHFINDER PhD student appointed - Mathias Lundberg
  • May 20, 2026: Spring Meeting Drammen Hospital
  • May 01, 2026: PATHFINDER postdoctoral researcher 2 starts at Ahus – Kushi Kushekhar

 

Navn

Hege Vangstein Aamot

Researcher, PhD — Principal Investigator

hege.vangstein.aamot@ahus.no

Dept. of Microbiology and Infection Control, Ahus

Last updated 10/13/2026